Doxygen fixups for libalpm

We haven't done a whole lot with Doxygen so far, so this updates some of the
things that have changed a lot- namely, the now public exposure of alpm_list.
All functions in this file have now been Doxygen commented, and a few other
things in alpm.c were fixed as well. In addition, the Doxygen config file
was updated.

Signed-off-by: Dan McGee <dan@archlinux.org>

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